Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs117227151 chr9:72940085 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs117244137 chr8:104029976 T/A 2.52E-12 487 31.18 28.63 18.15 KM Plot
PRAD rs11726985 chr4:185213935 A/T 0.000162 487 29.4 32.13 27.43 KM Plot
PRAD rs11734030 chr4:4442734 C/T 0.000189 488 30.12 35.93 24.32 KM Plot
PRAD rs117357875 chr17:6702166 T/G 4.96E-6 493 31.27 24.27 11.98 KM Plot
PRAD rs11739841 chr5:171529949 A/G 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs11742229 chr5:138031355 C/A 1.15E-5 482 30.5 31.38 25.2 KM Plot
PRAD rs11743264 chr5:171531730 G/C 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs11746193 chr5:171529468 C/T 1.38E-7 486 30.93 31.87 13.18 KM Plot
PRAD rs11746316 chr5:171529624 G/A 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs11746419 chr5:171529968 G/T 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs11746714 chr5:171531594 T/C 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs11747308 chr5:171733317 T/C 0.000157 477 29.13 33.42 27.43 KM Plot
PRAD rs11749706 chr5:171531662 A/G 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs117663320 chr7:6742580 G/A 3.48E-7 490 31.13 26.37 50.03 KM Plot